Table 2

Se, Sp, and J for each risk factor to predict any IA, IAA-first, or GADA-first at age of 6 years or progression to T1D at 3 years from the appearance of multiple autoantibodies

At age of 6 years
Progression to T1D at year 3
Any IA
IAA-first
GADA-first
Risk factor Se Sp J Se Sp J Se Sp J Se Sp J 
Family history (FDR vs. GP) 0.214 0.886 0.100 0.226 0.886 0.112 0.193 0.886 0.079    
Sex (female vs. male) 0.547 0.491 0.038 0.564 0.491 0.055 0.532 0.491 0.023 0.517 0.598 0.115 
HLA genotype (DR3/4 vs. others) 0.498 0.619 0.117 0.485 0.619 0.104 0.484 0.619 0.103    
Probiotics introduction age (<28 days vs. ≥28 days) 0.943 0.078 0.020 0.945 0.078 0.023 0.959 0.078 0.036    
Weight z score at 12 months (≥median vs. <median) 0.550 0.509 0.059 0.511 0.509 0.020 0.605 0.509 0.114    
First infant formula type during the first 7 days of life (extensively hydrolyzed vs. other) 0.045 0.972 0.017 0.056 0.972 0.028 0.037 0.972 0.009    
First infant formula type during the first 3 months of life (extensively hydrolyzed vs. other) 0.050 0.966 0.015 0.060 0.966 0.025 0.041 0.966 0.006    
Age at multiple persistent confirmed autoantibodies (months) (≥median vs. <median)          0.732 0.496 0.228 
Type of first autoantibody (≥2 autoantibodies vs. 1 autoantibody)          0.370 0.756 0.127 
rs1004446 (INS0.463 0.606 0.069 0.488 0.606 0.093 0.416 0.606 0.022 0.538 0.551 0.089 
rs10517086 0.511 0.514 0.025 0.511 0.514 0.025 0.508 0.486 −0.006 0.545 0.457 0.002 
rs1534422          0.796 0.295 0.091 
rs2327832 (TNFAIP3         0.391 0.658 0.049 
rs1143678 (ITGAM0.746 0.268 0.014 0.726 0.268 −0.006 0.762 0.268 0.030    
rs12708716 (CLEC16A0.475 0.561 0.036 0.442 0.561 0.003 0.480 0.561 0.042    
rs2292239 (ERBB30.624 0.472 0.096 0.621 0.472 0.093 0.640 0.472 0.112    
rs2476601 (PTPN220.309 0.802 0.111 0.321 0.802 0.123 0.294 0.802 0.095    
rs2816316 (RGS10.344 0.673 0.016 0.328 0.673 0.000 0.337 0.673 0.010    
rs3184504 (SH2B30.755 0.315 0.069 0.725 0.315 0.040 0.791 0.315 0.105    
rs4597342 (ITGAM0.582 0.436 0.018 0.456 0.564 0.020 0.595 0.436 0.031    
rs4948088 (COBL0.936 0.086 0.022 0.951 0.086 0.037 0.921 0.086 0.008    
At age of 6 years
Progression to T1D at year 3
Any IA
IAA-first
GADA-first
Risk factor Se Sp J Se Sp J Se Sp J Se Sp J 
Family history (FDR vs. GP) 0.214 0.886 0.100 0.226 0.886 0.112 0.193 0.886 0.079    
Sex (female vs. male) 0.547 0.491 0.038 0.564 0.491 0.055 0.532 0.491 0.023 0.517 0.598 0.115 
HLA genotype (DR3/4 vs. others) 0.498 0.619 0.117 0.485 0.619 0.104 0.484 0.619 0.103    
Probiotics introduction age (<28 days vs. ≥28 days) 0.943 0.078 0.020 0.945 0.078 0.023 0.959 0.078 0.036    
Weight z score at 12 months (≥median vs. <median) 0.550 0.509 0.059 0.511 0.509 0.020 0.605 0.509 0.114    
First infant formula type during the first 7 days of life (extensively hydrolyzed vs. other) 0.045 0.972 0.017 0.056 0.972 0.028 0.037 0.972 0.009    
First infant formula type during the first 3 months of life (extensively hydrolyzed vs. other) 0.050 0.966 0.015 0.060 0.966 0.025 0.041 0.966 0.006    
Age at multiple persistent confirmed autoantibodies (months) (≥median vs. <median)          0.732 0.496 0.228 
Type of first autoantibody (≥2 autoantibodies vs. 1 autoantibody)          0.370 0.756 0.127 
rs1004446 (INS0.463 0.606 0.069 0.488 0.606 0.093 0.416 0.606 0.022 0.538 0.551 0.089 
rs10517086 0.511 0.514 0.025 0.511 0.514 0.025 0.508 0.486 −0.006 0.545 0.457 0.002 
rs1534422          0.796 0.295 0.091 
rs2327832 (TNFAIP3         0.391 0.658 0.049 
rs1143678 (ITGAM0.746 0.268 0.014 0.726 0.268 −0.006 0.762 0.268 0.030    
rs12708716 (CLEC16A0.475 0.561 0.036 0.442 0.561 0.003 0.480 0.561 0.042    
rs2292239 (ERBB30.624 0.472 0.096 0.621 0.472 0.093 0.640 0.472 0.112    
rs2476601 (PTPN220.309 0.802 0.111 0.321 0.802 0.123 0.294 0.802 0.095    
rs2816316 (RGS10.344 0.673 0.016 0.328 0.673 0.000 0.337 0.673 0.010    
rs3184504 (SH2B30.755 0.315 0.069 0.725 0.315 0.040 0.791 0.315 0.105    
rs4597342 (ITGAM0.582 0.436 0.018 0.456 0.564 0.020 0.595 0.436 0.031    
rs4948088 (COBL0.936 0.086 0.022 0.951 0.086 0.037 0.921 0.086 0.008    
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